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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGGAGGAGCTATGCAGCAACGGATTCCAGAGGGCGAGCATGAGTTGCGAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactgaattcctctcgtattgtgatgccatcgtactctgcacagtaacgtcagttgacctcgaacaccaggtcatggagggtattgtgatcggctatatggatgtcttgctgtttttctgacatttagagttgctacatttgctacag

Basic information

species Physcomitrella patens
transcript PP1S91_57V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163278|gb|FC339396.1|FC339396
EST:     GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG                         GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: gi|162184265|gb|FC359687.1|FC359687
EST:     GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG                         GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: gi|162206600|gb|FC382358.1|FC382358
EST:     GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG                         GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: gi|208350890|gb|DC909937.1|DC909937
EST:     GAGCTGTCTGTTCAAA-TGCGGTTCAATACATTATCAGAATCCTAAAATG                         GTGGTAGGTNGCCTGGTGGANCATGANANCAAGGTGTTGCTTTGCAGGAAG
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: gi|208354807|gb|DC934215.1|DC934215
EST:     GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG                         GTGGTAGGTNGCCTGGTGGANCATGAAAACAAGGTGTTGCTTNGCAGGA
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGA