Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgagggacctgaactcattgacaggactcaatcaaatctgattgaagcagactttttgctgaacttgttcgaccttctagtaattgaagctgtcaca...

Basic information

species Physcomitrella patens
transcript PP1S91_182V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508474|gb|BJ941340.1|BJ941340
EST:     CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTNCTTAAAG                         GTGGNTTCTAGTGCG
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCG
EST: gi|162245796|gb|FC420463.1|FC420463
EST:     CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAG                         GTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
EST: gi|208346422|gb|DC917375.1|DC917375
EST:     CCCTTTTGGCACGAGC-ANTGCCAGCCACATTGATGCTNATTTCTTAAAG                         GTGGTTTCTAGTGCGANTGTGGACAAGTACATAGGAGAAAGTGCANGACTC
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
EST: gi|100403562|gb|BY954988.1|BY954988
EST:     CCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCNTA-TTTCTTAAAG                         GTGGGTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
genomic: CCTTCTGGCACGAGCAATTGCCAGCAACATTGATGC-TAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 14

GGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTCATTAGGGAGATGTTTAGTTATGCCCGCGACCATCAA




<











<


<