1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctccagctatccttattttcttcaaactcgtgcaggttttgattactgaatgtgttagagagtgtgcataatgccggtaataacaggtgttcttttacagGGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAG
species | Physcomitrella patens |
transcript | PP1S91_182V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAG GGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAEST: gi|100386933|gb|BY988202.1|BY988202
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGA
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAG GGTGTATTGTTGTATGEST: gi|100448214|gb|CJ972513.1|CJ972513
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATG
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAANG G-TGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAANCCTTCTGGCACGAEST: gi|67508474|gb|BJ941340.1|BJ941340
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGA
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAG GGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAEST: gi|100426731|gb|BY977333.1|BY977333
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGA
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAG GGTGTATTGTTGTATGGEST: gi|100403562|gb|BY954988.1|BY954988
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATGG
EST: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAG GGTGTATTGTTGTATGGNNNNNNNAG-AACCGGCAAAACCCTTCTGGCACG
genomic: CGCTTATGAATCCCGAGCTCTTCCTGCGAGTTGGCATTAAGCCTCCAAAGgtgtgtttta ... tcttttacagGGTGTATTGTTGTATGGCCCCCC-AGGAACCGGCAAAACCCTTCTGGCACG
ctgaatgtgttagagagtgtgcataatgccggtaataacaggtgttcttttacagGGTGTATTGTTGTATGGCCCCCCAGGAACCGGCAAAACCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAG
taataac putative branch site (score: 11)
tgttctttt putative PPT
taataaca TA-rich tract