1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaatatctctatttcgatgcttgcaaaattctgattggagtgaacgccaattttttgttatatgcttccgtatctgacgtatggttgggtttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTCATTAGGGAGATGTTTAGTTATGCCCGCGACCATCAA
species | Physcomitrella patens |
transcript | PP1S91_182V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTNCTTAAAG GTGGNTTCTAGTGCGEST: gi|162245796|gb|FC420463.1|FC420463
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCG
EST: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAG GTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTCEST: gi|208346422|gb|DC917375.1|DC917375
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
EST: CCCTTTTGGCACGAGC-ANTGCCAGCCACATTGATGCTNATTTCTTAAAG GTGGTTTCTAGTGCGANTGTGGACAAGTACATAGGAGAAAGTGCANGACTCEST: gi|100403562|gb|BY954988.1|BY954988
genomic: CCCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCTAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
EST: CCTTCTGGCACGAGCAATTGCCAGCAACATTGATGCNTA-TTTCTTAAAG GTGGGTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
genomic: CCTTCTGGCACGAGCAATTGCCAGCAACATTGATGC-TAATTTCTTAAAGgtacgaggga ... ttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTC
gccaattttttgttatatgcttccgtatctgacgtatggttgggtttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTCATTAGGGAGATGTTTAGTTATGCCCGCGACCATCAA
atctgac putative branch site (score: 14)
tttctgttc putative PPT
ttttttgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatctctatttcgatgcttgcaaaattctgattggagtgaacgccaattttttgttatatgcttccgtatctgacgtatggttgggtttctgttcagGTGGTTTCTAGTGCGATTGTGGACAAGTACATAGGAGAAAGTGCAAGACTCATTAGGGAGATGTTTAGTTATGCCCGCGACCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG