1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtacctgtgattggggctttgttgttgtttttgttcgagatttttttttaggttttttgttatgagagtcgggagggtgcgtggggttgaatgtgtgtttgatgggttttgggtgatccgattgagggtcgggtgtggatgatgaattttttgggggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGACCTCAAGGCGTTGCAAAGTGTGGGGCAAATCATCGGAGAAGTCTTGAG
species | Physcomitrella patens |
transcript | PP1S91_182V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100386933|gb|BY988202.1|BY988202
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100449435|gb|CJ973734.1|CJ973734
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACGGAGGACGEST: gi|100448214|gb|CJ972513.1|CJ972513
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|67508474|gb|BJ941340.1|BJ941340
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100378570|gb|BY968666.1|BY968666
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100426731|gb|BY977333.1|BY977333
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100403562|gb|BY954988.1|BY954988
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|100442911|gb|BY963406.1|BY963406
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGEST: gi|67703931|gb|BJ964164.1|BJ964164
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
EST: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATT TGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
genomic: CAGGCGCAAGCTTCTGCAACACAAGGAGCTCGATGCACGGCTAAGGAATTgttagtacct ... ggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACG
gggtgatccgattgagggtcgggtgtggatgatgaattttttgggggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGACCTCAAGGCGTTGCAAAGTGTGGGGCAAATCATCGGAGAAGTCTTGAG
atgatgaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtacctgtgattggggctttgttgttgtttttgttcgagatttttttttaggttttttgttatgagagtcgggagggtgcgtggggttgaatgtgtgtttgatgggttttgggtgatccgattgagggtcgggtgtggatgatgaattttttgggggtttggcagTGCGAGAGAACGTGAAGGCTGCGAGGAAGGAGTTTGATAAGACAGAGGACGACCTCAAGGCGTTGCAAAGTGTGGGGCAAATCATCGGAGAAGTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
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