1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcatttttgaaatgctgttaatgacctgttctgagcgactcggacttatttttagacaatgacgttgcttatggtgtgattttgggtggtggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACGGCTCCTGATATTGCTGGCAAG
species | Physcomitrella patens |
transcript | PP1S83_44V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCGATTTGTGTGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|208389513|gb|DC945779.1|DC945779
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|162167331|gb|FC342319.1|FC342319
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGTGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|18335291|gb|BJ167309.1|BJ167309
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: GTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|208371954|gb|DC951931.1|DC951931
genomic: GTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|162182877|gb|FC359780.1|FC359780
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGTGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|162160957|gb|FC336994.1|FC336994
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGTGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACEST: gi|67723757|gb|BJ974016.1|BJ974016
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
EST: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAG TGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
genomic: ATCAGCGATTTGTGCGCTGGTCTAATTGGCGGTCTAGGGCTGACGCCTAGgtaggattga ... tggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAAC
cttatttttagacaatgacgttgcttatggtgtgattttgggtggtggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACGGCTCCTGATATTGCTGGCAAG
ttttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttttgaaatgctgttaatgacctgttctgagcgactcggacttatttttagacaatgacgttgcttatggtgtgattttgggtggtggataacagTGGAAACATTGGAGATAATGGATTGGCCTTGATGGAAGCTGTGCATGGAACGGCTCCTGATATTGCTGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA