1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatatcgttgttgaaggtccatactagctattccttttgaattgaatccgaatcgttgccaccaaaattgatttggattcttagagtattcaatcaaggacgatttgaaagaaggtgtagtaggaaacattgcttacatgggtcggtcgatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG
species | Physcomitrella patens |
transcript | PP1S83_44V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAG TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCEST: gi|162182877|gb|FC359780.1|FC359780
genomic: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAGgtaaatatcg ... gatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTC
EST: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAG TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCEST: gi|162160957|gb|FC336994.1|FC336994
genomic: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAGgtaaatatcg ... gatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTC
EST: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAG TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCEST: gi|67723757|gb|BJ974016.1|BJ974016
genomic: TCATTCACAAAGCAAATATCATGAAGAAAACAGATGGATTATTTTTGGAGgtaaatatcg ... gatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTC
EST: AGAAAACAGATGGATTATTTTTGGAG TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTC
genomic: AGAAAACAGATGGATTATTTTTGGAGgtaaatatcg ... gatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTC
tttgaaagaaggtgtagtaggaaacattgcttacatgggtcggtcgatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG
tgcttac putative branch site (score: 2)
aaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcgttgttgaaggtccatactagctattccttttgaattgaatccgaatcgttgccaccaaaattgatttggattcttagagtattcaatcaaggacgatttgaaagaaggtgtagtaggaaacattgcttacatgggtcggtcgatgttacagTGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC