1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttcatcaaccttctaatcgttagagaatgtggattcgaatttgaaggaaccagtcctagttaaatttatgcgtacatttagtttggactagtga...
species | Physcomitrella patens |
transcript | PP1S83_44V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCCAGACA-TGTGTATGAAGAGGTCATCA-TGACAATTGCTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTACEST: gi|162167332|gb|FC342320.1|FC342320
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
EST: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTACEST: gi|208371954|gb|DC951931.1|DC951931
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
EST: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTACEST: gi|162182877|gb|FC359780.1|FC359780
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
EST: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTACEST: gi|162160957|gb|FC336994.1|FC336994
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
EST: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTACEST: gi|67723757|gb|BJ974016.1|BJ974016
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
EST: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATT-CTGCATGATG TTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
genomic: ACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttca ... ccttgtgcagTTGGTAAAGAACCCCGCATTATTTGATGTATTGGTAATGCCTAATCTTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGCAGGGAAATAGCTGCTGAGTACCCAGACATTGTGTATGAAGAGGTCATCATTGACAATTGCTGCATGATGgtaagtttcatcaaccttctaatcgttagagaatgtggattcgaatttgaaggaaccagtcctagttaaatttatgcgtacatttagtttggactagtga
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC