1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtataccaataacgcattccttggagaggatctgaatgttctgtgaacatgaatttgttaattaaaggtattgagctccaagttcgtttgctttcttagGTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGTATGCGCGTGGCTAAGTACGCATTCCACTATGCTCGCTTACACGGCAGGA
species | Physcomitrella patens |
transcript | PP1S83_44V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAG GTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGTEST: gi|162182877|gb|FC359780.1|FC359780
genomic: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAGgtgggttctg ... gctttcttagGTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGT
EST: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAG GTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGTEST: gi|162160957|gb|FC336994.1|FC336994
genomic: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAGgtgggttctg ... gctttcttagGTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGT
EST: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAG GTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGT
genomic: TCACCATTCGAGAAAACACTGAAGGCGAGTACAGTGGGTTGGAACATCAGgtgggttctg ... gctttcttagGTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGT
gaacatgaatttgttaattaaaggtattgagctccaagttcgtttgctttcttagGTGGTGAGCGGGGTGGTGGAGAGCATAAAAATTATTACCAAGAATGCAAGTATGCGCGTGGCTAAGTACGCATTCCACTATGCTCGCTTACACGGCAGGA
tgttaat putative branch site (score: 7)
ttcgtttgctttctt putative PPT
aatttgttaattaaag TA-rich tract