Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatacctgtttacagattgaatcataggttgtgatgttcatgtgcatattagaactcgagcataagttgttaaatgagtttactgggattttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCT

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100356493|gb|BY946393.1|BY946393
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208400149|gb|DC904797.1|DC904797
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100441923|gb|BY981146.1|BY981146
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100433601|gb|BY960613.1|BY960613
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18354198|gb|BJ186254.1|BJ186254
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67571124|gb|BJ943948.1|BJ943948
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18352488|gb|BJ184542.1|BJ184542
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100355006|gb|BY964953.1|BY964953
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCA--G                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100428521|gb|BY977849.1|BY977849
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100385543|gb|BY969880.1|BY969880
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162198705|gb|FC374825.1|FC374825
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100368433|gb|BY967008.1|BY967008
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208371531|gb|DC936252.1|DC936252
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208350239|gb|DC901609.1|DC901609
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100450777|gb|CJ974434.1|CJ974434
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208348942|gb|DC913366.1|DC913366
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|22492796|gb|BU052719.1|BU052719
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100387879|gb|BY970624.1|BY970624
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100418194|gb|BY993379.1|BY993379
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GATGGCAAGTTC-AA-                         -AGGTGTTTGACTCGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: GATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100390343|gb|BY952751.1|BY952751
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208347143|gb|DC901908.1|DC901908
EST:     AATCAGGGCCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100376489|gb|BY986191.1|BY986191
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100443863|gb|BY982091.1|BY982091
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100406878|gb|BY973912.1|BY973912
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100439008|gb|BY961914.1|BY961914
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100430774|gb|BY978390.1|BY978390
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100354634|gb|BY983488.1|BY983488
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGACAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100390415|gb|BY952823.1|BY952823
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18356788|gb|BJ188847.1|BJ188847
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATACCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100389145|gb|BY952349.1|BY952349
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100383456|gb|BY950240.1|BY950240
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100440750|gb|BY980570.1|BY980570
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100383536|gb|BY950320.1|BY950320
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18344081|gb|BJ176120.1|BJ176120
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100381203|gb|BY950023.1|BY950023
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 8 (downstream exon)
Score: 2

GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattagaactcgagcataagttgttaaatgagtttactgggattttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCT
                ataagttgttaaat  TA-rich tract