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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttacactttgtataaccctgaggttttcgtaaagataatcgacccctgttttatgactaattactatttcgaataacgtgaatccccgtttccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100356493|gb|BY946393.1|BY946393
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACCG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208400149|gb|DC904797.1|DC904797
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100441923|gb|BY981146.1|BY981146
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100433601|gb|BY960613.1|BY960613
EST:     AAAGGTTTTAGAAATTGGCCGTGTTTGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18354198|gb|BJ186254.1|BJ186254
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|67571124|gb|BJ943948.1|BJ943948
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18352488|gb|BJ184542.1|BJ184542
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100355006|gb|BY964953.1|BY964953
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100428521|gb|BY977849.1|BY977849
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACGCTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100385543|gb|BY969880.1|BY969880
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162198705|gb|FC374825.1|FC374825
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100368433|gb|BY967008.1|BY967008
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208371531|gb|DC936252.1|DC936252
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208350239|gb|DC901609.1|DC901609
EST:     AAAGGTTTTANAAATTGGCCGTGTTCGGATTTATCANAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100450777|gb|CJ974434.1|CJ974434
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208348942|gb|DC913366.1|DC913366
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|22492796|gb|BU052719.1|BU052719
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100387879|gb|BY970624.1|BY970624
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100418194|gb|BY993379.1|BY993379
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGGGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100390343|gb|BY952751.1|BY952751
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|208347143|gb|DC901908.1|DC901908
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGGCCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     CTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: CTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100376489|gb|BY986191.1|BY986191
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100443863|gb|BY982091.1|BY982091
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100406878|gb|BY973912.1|BY973912
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100439008|gb|BY961914.1|BY961914
EST:     AAAGGTTTTAGAAATTGGCCGTGTTTGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100430774|gb|BY978390.1|BY978390
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100354634|gb|BY983488.1|BY983488
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100390415|gb|BY952823.1|BY952823
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18356788|gb|BJ188847.1|BJ188847
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100389145|gb|BY952349.1|BY952349
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100383456|gb|BY950240.1|BY950240
EST:     AAAGG-TTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100440750|gb|BY980570.1|BY980570
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100383536|gb|BY950320.1|BY950320
EST:     AAAGG-TTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|18344081|gb|BJ176120.1|BJ176120
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
EST: gi|100381203|gb|BY950023.1|BY950023
EST:     AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTG                         GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA
genomic: AAAGGTTTTAGAAATTGGCCGTGTTCGGATTTATCAGAGCTTGAGCACTGgtatggcgtt ... tccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttatgactaattactatttcgaataacgtgaatccccgtttccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG
                         gaataac  putative branch site (score: 2)
                                     tccccgtttccttctc  putative PPT
          actaattactattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttacactttgtataaccctgaggttttcgtaaagataatcgacccctgttttatgactaattactatttcgaataacgtgaatccccgtttccttctcagGAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG