1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatcctgagatgtggctgtagctctgttataaatctctatggttgctgtttgttgctgataacagttatctgacggagacttttaattttcattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAG
species | Physcomitrella patens |
transcript | PP1S77_275V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGATGAGATAGATCCTATCAGCATTAGACGTTCTACTCGTGACGCA TTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTEST: gi|18359593|gb|BJ191654.1|BJ191654
genomic: ATTTCGATGAGATAGATCCTATCAGCAT-AGACGTTCTACTCGTGACGCAgtaagttact ... cattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTT
EST: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCA TTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAGEST: gi|18351975|gb|BJ184027.1|BJ184027
genomic: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCAgtaagttact ... cattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAG
EST: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCA TTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAGEST: gi|18345408|gb|BJ177451.1|BJ177451
genomic: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCAgtaagttact ... cattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAG
EST: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCA TTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAG
genomic: TATTTCGATGAGATAGATCCTATCAGCATAGACGTTCTACTCGTGACGCAgtaagttact ... cattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAG
ctgtttgttgctgataacagttatctgacggagacttttaattttcattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAG
ttttcatttt CT-rich tract
acttttaattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcctgagatgtggctgtagctctgttataaatctctatggttgctgtttgttgctgataacagttatctgacggagacttttaattttcattttgcagTTTTCATCTCGACCATTGTGCTTCACTTCCTTATTTCCTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA