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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTGTCGAATGAGTCCTCGTTCCGGGTTCTCCCAGGATCTTTCGAAGTTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAGgtgggttttgccctgctctctggctctcttgcattctggtctatttcccgaagtagcagcaacaggctgtgtggacggatcattgcagtgcagagttttg...

Basic information

species Physcomitrella patens
transcript PP1S77_275V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359404|gb|BJ191465.1|BJ191465
EST:     TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAG                         ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
genomic: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: gi|18359593|gb|BJ191654.1|BJ191654
EST:     GGTCAAGGTTTGCGAG                         ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
genomic: GGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: gi|18351975|gb|BJ184027.1|BJ184027
EST:     ATTCGGTCAAGGTTTGCGAG                         ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
genomic: ATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: gi|18345408|gb|BJ177451.1|BJ177451
EST:     TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAG                         ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
genomic: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG