1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatccggtggagagggttttacgttgcttgtgggctgtgggtctcagaattgtggttgtgttgacatgcggtagtattgatttttctgccatactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGCCACGGTGATAACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGG
species | Physcomitrella patens |
transcript | PP1S77_275V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAG ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGEST: gi|18359593|gb|BJ191654.1|BJ191654
genomic: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: GGTCAAGGTTTGCGAG ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGEST: gi|18351975|gb|BJ184027.1|BJ184027
genomic: GGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: ATTCGGTCAAGGTTTGCGAG ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGEST: gi|18345408|gb|BJ177451.1|BJ177451
genomic: ATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
EST: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAG ATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
genomic: TTTACCTCGATCGGTTACTACCCCACGATCATTCGGTCAAGGTTTGCGAGgtgggttttg ... atactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTG
agaattgtggttgtgttgacatgcggtagtattgatttttctgccatactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGCCACGGTGATAACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGG
tattgat putative branch site (score: 3)
tagtattgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatccggtggagagggttttacgttgcttgtgggctgtgggtctcagaattgtggttgtgttgacatgcggtagtattgatttttctgccatactggcagATTGATCGAGACGTGTGAGTGGGGGAGCCATGTCGAAGCGTAAGGATACTGCCACGGTGATAACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacatgc