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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtttggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct...

Basic information

species Physcomitrella patens
transcript PP1S77_275V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S77_275V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv12s0035g00190.t01 (Vitis vinifera), 5'ss of exon 1
AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtttggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct-------------
|||  | || || ||  |||||    | ||||| || |||||||||||||| || || ||||| |||||||||||| |||| ||||| |||||  |  ||||       ||   |    |   ||   ||  | | | |  || | | ||  |   || |  ||| ||   ||  | | | ||||| ||  |||||   |             
AACAAGAGAAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttg-acatttttttttaatttgtttgtttct-attttgttcccgttctatgatgatag

upper sequence: PP1S77_275V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv12s0035g00030.t01 (Vitis vinifera), 5'ss of exon 1
AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtt--tggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct-------------
|         || ||  |||||    | ||||| || |||||||||||||| || || ||||| |||||||||||| |||| ||||| |||||  |  |||| |  |||| |||  ||    | | | || ||||||  | | ||    | |      |  || ||| ||    || |   || ||  |||  ||||| | |             
ATTAACAAGAGGAGACCAGCTGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtat--accataatgcattattcgtttatt-ttggttgctagtttttatactttgttttcgatattttttat--aatttgtttgtttctattttgttcctgttctgtgatgatag

upper sequence: PP1S77_275V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv12s0035g00170.t01 (Vitis vinifera), 5'ss of exon 1
AACGCGGGAGGGGGATAAGCTGGAGGTCACCCCCCTTGGTGCTGGAAATGAGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtaccaaaatatatgggccttctcttattggtt--tggcttgagaattaaaagatgcatgtttattgccaaactctctttttcttataatgttcttct----------
|||  | |  || ||  ||| |    | ||||| || |||||||||||||| || || ||||| |||||||||||| |||| ||||| |||||  |  |||| |  |||| |||  ||    ||| | || ||||||  | | ||    | |      |  |  ||| ||     ||| | ||| | || |  |  | ||||          
AACAAGAGTAGGAGACCAGCCGATTATTACCCCTCTAGGTGCTGGAAATGAAGTGGGCCGTTCCTGTGTCTACATGTCCTATAAAGGGAAAACCATATTGgtat--accataatgcattattcttttatt-ttggttgctagtttttatactttgttttcaacatttttttt---actttgtttctattttgttcctgttctatgacgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359404|gb|BJ191465.1|BJ191465
EST:     AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATG                         TTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
genomic: AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtacca ... ttctgtgcagTTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
EST: gi|18359593|gb|BJ191654.1|BJ191654
EST:     AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATG                         TTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
genomic: AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtacca ... ttctgtgcagTTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
EST: gi|18351975|gb|BJ184027.1|BJ184027
EST:     AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATG                         TTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
genomic: AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtacca ... ttctgtgcagTTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
EST: gi|18345408|gb|BJ177451.1|BJ177451
EST:     AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATG                         TTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT
genomic: AGGTTGGACGTTCGTGTGTCTACATGACCTACAAAGGCAAAACTGTGATGgtgtgtacca ... ttctgtgcagTTTGATTGTGGAATTCATCCTGGCTACTCTGGAATGGCAGCGCTTCCCTAT