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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaatgtatcgcacaaaaggaacgtggttatgagtgcacagatatgtcacgactatgagagtatctgacatcgcatagtgaattttgaattctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTTTGTATTTGCTTGAACATGGCGCAGACGCTCGTGCCACGCCCAGTGAGAA

Basic information

species Physcomitrella patens
transcript PP1S6_158V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181974|gb|FC356845.1|FC356845
EST:     GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATG                         GCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
genomic: GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATGgtaccttttt ... tctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
EST: gi|22133292|gb|BQ827654.1|BQ827654
EST:     GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATG                         GCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
genomic: GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATGgtaccttttt ... tctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
EST: gi|162176017|gb|FC351837.1|FC351837
EST:     GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATG                         GCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
genomic: GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATGgtaccttttt ... tctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
EST: gi|162157242|gb|FC332876.1|FC332876
EST:     GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATG                         GCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT
genomic: GTACATGGTGGATGAGCTCAAGCTTTCCATAGACGCTAGAGATAACGATGgtaccttttt ... tctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcacgactatgagagtatctgacatcgcatagtgaattttgaattctgatgcagGCGATACTCCTCTTATACACGCAGCCAGGCAGGGTCACACCTCAACTGCTTTGTATTTGCTTGAACATGGCGCAGACGCTCGTGCCACGCCCAGTGAGAA
                                            ttctgat  putative branch site (score: 3)
                                   aattttgaatt  TA-rich tract