1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAGAAATTATTGCCTGTTACAACGACCGACCCCGCCATTACGGATTGGACTGTTGACGGAGTCCTGTCTCATGCACGAAAACTAGCTGCTGATGAAGAGgtactgcactacctcggagaagtatatctcttttcagttcttaaaaattctacagtgaagctgcagtacaagcaatagaaacacacatatacacgaatatataccaaatttataatctttaagtacaacattgcttttatgcttggttgagcttggtgtaataggtgatttctctttacag
species | Physcomitrella patens |
transcript | PP1S6_158V6.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGCACGAAAACTAGCTGCTGATGAAGAG GCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAGEST: gi|162157241|gb|FC332875.1|FC332875
genomic: ATGCACGAAAACTAGCTGCTGATGAAGAGgtactgcact ... ctctttacagGCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAG
EST: CATGCACGAAAACTAGCTGCTGATGAAGAG GCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAGEST: gi|162176016|gb|FC351836.1|FC351836
genomic: CATGCACGAAAACTAGCTGCTGATGAAGAGgtactgcact ... ctctttacagGCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAG
EST: CATGCACGAAAACTAGCTGCTGATGAAGAG GCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAG
genomic: CATGCACGAAAACTAGCTGCTGATGAAGAGgtactgcact ... ctctttacagGCTGAATTTCGGAAATCAAGAGAGGCTGATGAAAAAGCCAAAGCCGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAATTATTGCCTGTTACAACGACCGACCCCGCCATTACGGATTGGACTGTTGACGGAGTCCTGTCTCATGCACGAAAACTAGCTGCTGATGAAGAGgtactgcactacctcggagaagtatatctcttttcagttcttaaaaattctacagtgaagctgcagtacaagcaatagaaacacacatatacacgaatatataccaaatttataatctttaagtacaacattgcttttatgcttggttgagcttggtgtaataggtgatttctctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA