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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAGGGAGTGAGTACTGGGCACGTGATTTTTCTCTGATTTGTTGGGCCACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattccatgaatgatctcttgatgagtttggacttgacgatcgtagacttactcctccagtagtgagacagatgaggagcttcggagtgtagattt...

Basic information

species Physcomitrella patens
transcript PP1S6_158V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181974|gb|FC356845.1|FC356845
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
EST: gi|22133292|gb|BQ827654.1|BQ827654
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
EST: gi|162176017|gb|FC351837.1|FC351837
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAAAGGGAGTGAGTACTGGGCACGTGATTTTTCTCTGATTTGTTGGGCCACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattccatgaatgatctcttgatgagtttggacttgacgatcgtagacttactcctccagtagtgagacagatgaggagcttcggagtgtagattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA