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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgaatctagactcctatcttttgtttgtgtaacgaattttcaattgttgaggtgcgttttcttttttttttttctttttttttttttcctcctcttccagttcactcatgtgttttggttttcgaggttgattttagGAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGGAGTGAGTACTGGGCACGTGATTTTTCTCTGATTTGTTGGGCCACGCCAT

Basic information

species Physcomitrella patens
transcript PP1S6_158V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133292|gb|BQ827654.1|BQ827654
EST:     TCTCCAGCTTCTTTCTC                         GAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGG
genomic: TCTCCAGCTTCTTTCTCgtgagctgaa ... ttgattttagGAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGG
EST: gi|162176017|gb|FC351837.1|FC351837
EST:     TCTCCAGCTTCTTTCTC                         GAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGG
genomic: TCTCCAGCTTCTTTCTCgtgagctgaa ... ttgattttagGAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcctcctcttccagttcactcatgtgttttggttttcgaggttgattttagGAGGTGGAAGTTGTGGAGGCTTGATTTTAGAGGCGAGGGCAATGAAAAGGGAGTGAGTACTGGGCACGTGATTTTTCTCTGATTTGTTGGGCCACGCCAT
                                           ggttgat  putative branch site (score: 5)
                                             ttgatttta  TA-rich tract