1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctaatttgtcatattggactttatcgtggcaacaagtgggatgtttaatgtgtgttcttttttgtaagtaaattttaaacggacgcttctatggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATGGAGAGAAACCTCGGAACAG
species | Physcomitrella patens |
transcript | PP1S62_226V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGG TTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATGEST: gi|162154420|gb|FC330422.1|FC330422
genomic: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGGgtgaatttga ... atggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATG
EST: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGG TTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATGEST: gi|100437818|gb|BY979843.1|BY979843
genomic: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGGgtgaatttga ... atggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATG
EST: ATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTTAT-CAGG TTGGATATTCTTEST: gi|162156868|gb|FC333022.1|FC333022
genomic: ATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTT-ATTCAGGgtgaatttga ... atggttgcagTTGGATATTCTT
EST: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGG TTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATG
genomic: CATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGGgtgaatttga ... atggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATG
taatgtgtgttcttttttgtaagtaaattttaaacggacgcttctatggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATGGAGAGAAACCTCGGAACAG
gtttaat putative branch site (score: 3)
cttctat putative PPT
tgttcttttttgtaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatttgtcatattggactttatcgtggcaacaagtgggatgtttaatgtgtgttcttttttgtaagtaaattttaaacggacgcttctatggttgcagTTGGATATTCTTATTATTATGACCCACGTATACATCGAAGCCTTATATATGGAGAGAAACCTCGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA