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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttaaaacatgtaacaagtttgagttttttctatgcattgtccttttcgtcacttgcatttagaatctgaaagagatactcattgctttgatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGG

Basic information

species Physcomitrella patens
transcript PP1S62_226V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386041|gb|BY969980.1|BY969980
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100357509|gb|BY984014.1|BY984014
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAG
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAG
EST: gi|162154420|gb|FC330422.1|FC330422
EST:     GAGACCTACTTGATTACTCGACTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100437818|gb|BY979843.1|BY979843
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|162156868|gb|FC333022.1|FC333022
EST:     GAGACCTACTTGATTACTCGACTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100358535|gb|BY983955.1|BY983955
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCA
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgtcacttgcatttagaatctgaaagagatactcattgctttgatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAATGTTCCTCATGATAGGCTTTATTCAGG
                                         ctttgat  putative branch site (score: 5)
             atttagaat  TA-rich tract