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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGGTTCTTTTAAAGAGTTCACACAGGACGTGCAGGCCGCAGCCGCTGAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagtcataactttgatggctttccttctggcttacctatttgttgtcggcctcgcgtgattattactctttcaatttatggagttgcgttagac...

Basic information

species Physcomitrella patens
transcript PP1S62_226V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386041|gb|BY969980.1|BY969980
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100357509|gb|BY984014.1|BY984014
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAG
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAG
EST: gi|162154420|gb|FC330422.1|FC330422
EST:     GAGACCTACTTGATTACTCGACTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100437818|gb|BY979843.1|BY979843
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|162156868|gb|FC333022.1|FC333022
EST:     GAGACCTACTTGATTACTCGACTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCAAGTTCATCCGTCTGAGTCTATATGCAAT
EST: gi|100358535|gb|BY983955.1|BY983955
EST:     GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGG                         AGTTGGAACGCGATGGATCAGCA
genomic: GAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagt ... gatggaacagAGTTGGAACGCGATGGATCAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAGGTTCTTTTAAAGAGTTCACACAGGACGTGCAGGCCGCAGCCGCTGAGACCTACTTGATTACTCGGCTCGCCCTCACGCTTTTGAAGTTCCTTGGgtataacagtcataactttgatggctttccttctggcttacctatttgttgtcggcctcgcgtgattattactctttcaatttatggagttgcgttagac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG