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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACGAAGGCTCTAGAGCTTAACCCGAACTACTTGAAAGCCCTAATGAGACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTGgtatgcagtatgaagtacttgtgcctgtgtacaatgtttttgagtatctgttttccatgatttttgaggtagttataaagaggatgtccatcataaacag...

Basic information

species Physcomitrella patens
transcript PP1S62_216V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208379389|gb|DC922947.1|DC922947
EST:     ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTG                         ACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
genomic: ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTGgtatgcagta ... tctgttgcagACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
EST: gi|37847056|gb|BJ605064.1|BJ605064
EST:     ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTG                         ACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
genomic: ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTGgtatgcagta ... tctgttgcagACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
EST: gi|208400047|gb|DC925259.1|DC925259
EST:     ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTG                         ACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
genomic: ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTGgtatgcagta ... tctgttgcagACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
EST: gi|37847806|gb|BJ605814.1|BJ605814
EST:     ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTG                         ACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT
genomic: ACGTGCGCAGGCCAATGAAAACCTTGAGAAATTTGAGGAAGCTCTTTCTGgtatgcagta ... tctgttgcagACTTGAAGAAAGCTCTTGAACTAGATCCTTCCAACAAAGCAGTTAGGGCTT