1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGCTACGCTAGTGCATTGGAAGACGTTGCCAATGATCCAAGTGCAAATGAGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacgaacagatctgagtataataatcatgtcagttatacccaacgattgatttttgccatcctttttacacaacctctggtgttatttggtggc...
species | Physcomitrella patens |
transcript | PP1S62_216V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTG AATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAACEST: gi|208383738|gb|DC911462.1|DC911462
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAAC
EST: AGCTGCGTGCACAATGCTACTCAA-TCGAGCTATTTGCGAA-TCANTCTG AATAATTACTCGGCTGCAGTGAAEST: gi|37847056|gb|BJ605064.1|BJ605064
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAA
EST: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTG AATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAACEST: gi|208344970|gb|DC909081.1|DC909081
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAAC
EST: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTG AATAATTACTCGGCTGCAGTGAAAGAEST: gi|208400047|gb|DC925259.1|DC925259
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAAAGA
EST: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTG AATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAACEST: gi|37847806|gb|BJ605814.1|BJ605814
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAAC
EST: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTG AATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAAC
genomic: AGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacg ... tattttgcagAATAATTACTCGGCTGCAGTGAAAGAGAGCACGAAGGCTCTAGAGCTTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTACGCTAGTGCATTGGAAGACGTTGCCAATGATCCAAGTGCAAATGAGCTGCGTGCACAATGCTACTCAAATCGAGCTATTTGCGAAATCAATCTGgtaattcacgaacagatctgagtataataatcatgtcagttatacccaacgattgatttttgccatcctttttacacaacctctggtgttatttggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC