1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attcgcaagtgaacctctatctttagaattcatcatgccatcacagattcgaatgaagcttacgataatttgacatcatctgattttttgtaacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTTGCAGAAGTCGATGCTCCTGAATATGAGCAGCAGAAGTTAAAGAAGAAC
species | Physcomitrella patens |
transcript | PP1S62_216V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|18367329|gb|BJ199412.1|BJ199412
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|208383738|gb|DC911462.1|DC911462
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|208344970|gb|DC909081.1|DC909081
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|18366670|gb|BJ198749.1|BJ198749
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|100426583|gb|BY977301.1|BY977301
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTEST: gi|100387222|gb|BY970366.1|BY970366
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
EST: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCG GATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
genomic: GACTTTCCTCGGAACTGGAGCTGCGGGTTGGAACTGCACCCGTGTGATCGgtgagtgtga ... taacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGT
gattcgaatgaagcttacgataatttgacatcatctgattttttgtaacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTTGCAGAAGTCGATGCTCCTGAATATGAGCAGCAGAAGTTAAAGAAGAAC
ttgtaac putative branch site (score: 2)
ttttttgt CT-rich tract
attttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcgcaagtgaacctctatctttagaattcatcatgccatcacagattcgaatgaagcttacgataatttgacatcatctgattttttgtaacgatcagGATATACTCTGCCTGAGGTTAGCACACAGAAAACATGGTGTTCATTGAGGTTGCAGAAGTCGATGCTCCTGAATATGAGCAGCAGAAGTTAAAGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC