1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGAAGAACGCTTCAAGTTCGAACGAGAAATCAGCTACCACATCAGGAAGCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaatacagaacactccttttctcttattgtgtgatcactgttatgcaaccatttctcaacagtttctcgcgagttttaatcctcaagtgctag...
species | Physcomitrella patens |
transcript | PP1S62_216V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|18367329|gb|BJ199412.1|BJ199412
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAEST: gi|208379389|gb|DC922947.1|DC922947
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCA
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|208383738|gb|DC911462.1|DC911462
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|37847056|gb|BJ605064.1|BJ605064
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|208344970|gb|DC909081.1|DC909081
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|18366670|gb|BJ198749.1|BJ198749
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|100426583|gb|BY977301.1|BY977301
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTATEST: gi|100387222|gb|BY970366.1|BY970366
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGGCAACA-TTTGTAEST: gi|208400047|gb|DC925259.1|DC925259
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGG-CAACAATTTGTA
EST: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCG AAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
genomic: GCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaa ... gtggacacagAAAGCCATATCTCTAGCAAATGCAGCGAAGTCTCAAGGCAACAATTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAGAACGCTTCAAGTTCGAACGAGAAATCAGCTACCACATCAGGAAGCACCGAAGATCATTTTGAGGATGCTTTGACTGAGGAGGAGCTCCGAGCGgtgtgtgaaatacagaacactccttttctcttattgtgtgatcactgttatgcaaccatttctcaacagtttctcgcgagttttaatcctcaagtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT