Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGGAGCCACTGGTTGCTTTTTGGCCTTCCTGTCACACAGCTTAACTGCATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccacattacttttcattgagcaattctgttcacagatggtatacagaccatctcatgtctggatttggtatactgattactactcatctgtatgtgtatgtgctgacag

Basic information

species Physcomitrella patens
transcript PP1S61_45V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150334|gb|FC326606.1|FC326606
EST:     CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: gi|162269084|gb|FC444952.1|FC444952
EST:     CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: gi|162269083|gb|FC444951.1|FC444951
EST:     CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: gi|162266670|gb|FC442017.1|FC442017
EST:     CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: gi|162266669|gb|FC442016.1|FC442016
EST:     CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: gi|162280232|gb|FC456249.1|FC456249
EST:     TTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG                         GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: TTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA