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gttggccacattacttttcattgagcaattctgttcacagatggtatacagaccatctcatgtctggatttggtatactgattactactcatctgtatgtgtatgtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCATTAGCCATGGCCATGTCTACGGTTTGCATACATGTTTTTGGAGATGTGC
species | Physcomitrella patens |
transcript | PP1S61_45V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCAEST: gi|162269084|gb|FC444952.1|FC444952
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCAEST: gi|162269083|gb|FC444951.1|FC444951
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCAEST: gi|162266670|gb|FC442017.1|FC442017
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCAEST: gi|162266669|gb|FC442016.1|FC442016
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCAEST: gi|162280232|gb|FC456249.1|FC456249
genomic: CATTCATTCTTCTCTTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
EST: TTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAG GGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
genomic: TTTGCAGTTGGCGAATTTTTCCTCTTTTCAACTCAGgttggccaca ... gtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCA
atgtctggatttggtatactgattactactcatctgtatgtgtatgtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCATTAGCCATGGCCATGTCTACGGTTTGCATACATGTTTTTGGAGATGTGC
tactgat putative branch site (score: 2)
attacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggccacattacttttcattgagcaattctgttcacagatggtatacagaccatctcatgtctggatttggtatactgattactactcatctgtatgtgtatgtgctgacagGGACCTGTAAATAGCCTCTCCCTCATGAGCGTTAATCCTAGTCTTCAGGCATTAGCCATGGCCATGTCTACGGTTTGCATACATGTTTTTGGAGATGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG