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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttacacacacgaaggagtaccatttggttaatattgatgttgttttaagacaaattgagtggattttaattgggtttcttttgtttcttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTCCTGTCACACAGCTTAACTGCATTCATTCTTCTCTTTGCAGTTGGCGAAT

Basic information

species Physcomitrella patens
transcript PP1S61_45V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150334|gb|FC326606.1|FC326606
EST:     TCGGAATTCATTCAAG                         TTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
genomic: TCGGAATTCATTCAAGgtgctgaatt ... cttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
EST: gi|162269084|gb|FC444952.1|FC444952
EST:     GCGGTCTTTTCTTGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAG                         TTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
genomic: GCGGTCTTTTCTTGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAGgtgctgaatt ... cttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
EST: gi|162269083|gb|FC444951.1|FC444951
EST:     TGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAG                         TTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
genomic: TGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAGgtgctgaatt ... cttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
EST: gi|162266670|gb|FC442017.1|FC442017
EST:     GCGGTCTTTTCTTGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAG                         TTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
genomic: GCGGTCTTTTCTTGGACTATATAGGAGCCTCTCTTCGGAATTCATTCAAGgtgctgaatt ... cttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
EST: gi|162266669|gb|FC442016.1|FC442016
EST:     GGAATTCATTCAAG                         TTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC
genomic: GGAATTCATTCAAGgtgctgaatt ... cttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttaagacaaattgagtggattttaattgggtttcttttgtttcttggtgcagTTGCTTGCAGTGGCGACAGCCGTGGGAGCCACTGGTTGCTTTTTGGCCTTCCTGTCACACAGCTTAACTGCATTCATTCTTCTCTTTGCAGTTGGCGAAT
                      ttttaat  putative branch site (score: 3)
                                 tttcttttgtttctt  putative PPT
                     attttaatt  TA-rich tract