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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtcgtgaaataatttaaacctatttcgtaattgttgatcactaattatctaatgcattgttccattaataggtttaatgaattgaataagaaacatgttgcagattcttgaatctgtttaccaccccttgttaacggctaacttcaggatgcatatatcggtttggttggcaactgtagGTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAGAAGCCTTGATTGGTATCCAGAATGATGAGTCTAGGTCTTTTGACCTCAC

Basic information

species Physcomitrella patens
transcript PP1S61_255V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100436989|gb|BY979627.1|BY979627
EST:     GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAG                         GTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG
genomic: GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAGgtaagtagtc ... gcaactgtagGTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG
EST: gi|162216093|gb|FC392926.1|FC392926
EST:     GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAG                         GTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG
genomic: GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAGgtaagtagtc ... gcaactgtagGTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG
EST: gi|162199930|gb|FC376197.1|FC376197
EST:     GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAG                         GTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG
genomic: GAATGAAGATGGCACTACTGGTGATGAAATTTTGTCCTGCAAGCAGAAAGgtaagtagtc ... gcaactgtagGTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttgttaacggctaacttcaggatgcatatatcggtttggttggcaactgtagGTTTCCGGCTTGACACAGATGAAGGAGGTAGCTTTTTACCGGGCTTCGTAGAAGCCTTGATTGGTATCCAGAATGATGAGTCTAGGTCTTTTGACCTCAC
           ggctaac  putative branch site (score: 2)
                            atatat  TA-rich tract