1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attgagtgttgtgaggtgaaagatttattgtgatttaagttgctgctactccttgagatgaatagatttatgaaatgggaacgcaattgtctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCCGATTTGGCAGCTGGTTTTGCCCCAGATAAACCTTTAAG
species | Physcomitrella patens |
transcript | PP1S61_255V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCT GTCGCCGGGAGAGCAATCAAGGACTCTGAGCAEST: gi|100406296|gb|BY955561.1|BY955561
genomic: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCTgtaagtcctt ... ctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCA
EST: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCT GTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCCEST: gi|162199930|gb|FC376197.1|FC376197
genomic: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCTgtaagtcctt ... ctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCC
EST: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCT GTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCC
genomic: CTGCGGTCGAGGCTGTGCTCAAGCGCACACTTCCAGAAGCAATGTCCTCTgtaagtcctt ... ctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCC
ctactccttgagatgaatagatttatgaaatgggaacgcaattgtctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCCGATTTGGCAGCTGGTTTTGCCCCAGATAAACCTTTAAG
gtctgac putative branch site (score: 3)
aatagatttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgagtgttgtgaggtgaaagatttattgtgatttaagttgctgctactccttgagatgaatagatttatgaaatgggaacgcaattgtctgactgtagGTCGCCGGGAGAGCAATCAAGGACTCTGAGCATATTTCCACAAAATTTGCCGATTTGGCAGCTGGTTTTGCCCCAGATAAACCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG