1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agcattggatagaggcctttgggttagacataggatctctttggaaatagaagtggtaaaatgaaccatttgaatgcgaatggtttttcctggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATTTCATTGGCCAAGATCAAATACGTTCCTCTGCGGTCGAGGCTGTGCTCA
species | Physcomitrella patens |
transcript | PP1S61_255V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAEST: gi|100448443|gb|CJ972742.1|CJ972742
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCC-GGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAA
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGNTTTTCGGNCTGGAAAGAACATANCAGAAAATGTGCTGATCAATEST: gi|67716881|gb|BJ967140.1|BJ967140
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATEST: gi|67717261|gb|BJ967520.1|BJ967520
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATEST: gi|100423951|gb|BY976602.1|BY976602
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATEST: gi|100406296|gb|BY955561.1|BY955561
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATEST: gi|162199930|gb|FC376197.1|FC376197
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
EST: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAG GTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
genomic: GTAAAGACTGCTACGATCAAGTTTTGAAAGAATTTGGCAAGCAATCAAAGgtgagctctt ... tggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAAT
aatagaagtggtaaaatgaaccatttgaatgcgaatggtttttcctggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATTTCATTGGCCAAGATCAAATACGTTCCTCTGCGGTCGAGGCTGTGCTCA
tttttcct CT-rich tract
taaaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcattggatagaggcctttgggttagacataggatctctttggaaatagaagtggtaaaatgaaccatttgaatgcgaatggtttttcctggtgctcagGTTCCGGGTTTTCGGCCTGGAAAGAACATACCAGAAAATGTGCTGATCAATTTCATTGGCCAAGATCAAATACGTTCCTCTGCGGTCGAGGCTGTGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA