1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...catggttcttgaagtgcatcgtggaaacgagtttttggtgctggagaattatctgtgtgctcctgcgctgcagctaaagtttttagattctcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAGTGTTCAAATATCCTCAACAGGATCATAGAAGGAGGCGAGGTGAAGCTG
species | Physcomitrella patens |
transcript | PP1S61_255V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAEST: gi|100448443|gb|CJ972742.1|CJ972742
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
EST: TCNTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCANCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAEST: gi|67716881|gb|BJ967140.1|BJ967140
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
EST: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAEST: gi|67717261|gb|BJ967520.1|BJ967520
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
EST: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAEST: gi|100423951|gb|BY976602.1|BY976602
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
EST: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAEST: gi|100406296|gb|BY955561.1|BY955561
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
EST: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAG AAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
genomic: TCGTGCTGCCTCTTTCCTCTCCCTCTGCTGGTGTTTCCAGCGAGCTCAAGgtaggccacg ... tcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCA
gaattatctgtgtgctcctgcgctgcagctaaagtttttagattctcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAGTGTTCAAATATCCTCAACAGGATCATAGAAGGAGGCGAGGTGAAGCTG
agctaaa putative branch site (score: 3)
ttctc putative PPT
taaagtttttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggttcttgaagtgcatcgtggaaacgagtttttggtgctggagaattatctgtgtgctcctgcgctgcagctaaagtttttagattctcgaatacagAAGTCGAGAAGGTTTCAGCAGGGTGCAGGCAATGGATTCAACTTGGTAGCAGTGTTCAAATATCCTCAACAGGATCATAGAAGGAGGCGAGGTGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctgca