1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgttacctcctctacactttatgaaatttttgttaaaggatccttcttcaactgtaacaaatcactcgcttcgtgctgtttgttggtatcaaatgtttgacaaattaggtgcaattcattgacgcaagagtgtttactttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTGATCGACACATGAATACCTCAGCTGTTCTGAGATCCTATTTTGCAGGCTT
species | Physcomitrella patens |
transcript | PP1S61_208V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAATTGGAGGGATGATCAACGAANAGAATTGTGCCCTA-TTGCTGACGG AGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTGEST: gi|162209806|gb|FC385740.1|FC385740
genomic: TGAATTGGAGGGATGATCAACGAAAAGAATTGTGCC-TAATTGCTGACGGgttcgttacc ... ctttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTG
EST: GTGAATTGGAGGGATGATCAACGAAAAGAATTGTGCCTAATTGCTGACGG AGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTGEST: gi|162190314|gb|FC365328.1|FC365328
genomic: GTGAATTGGAGGGATGATCAACGAAAAGAATTGTGCCTAATTGCTGACGGgttcgttacc ... ctttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTG
EST: GTGAATTGGAGGGATGATCAACGAAAAGAATTGTGCCTAATTGCTGACGG AGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTG
genomic: GTGAATTGGAGGGATGATCAACGAAAAGAATTGTGCCTAATTGCTGACGGgttcgttacc ... ctttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTG
aatgtttgacaaattaggtgcaattcattgacgcaagagtgtttactttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTGATCGACACATGAATACCTCAGCTGTTCTGAGATCCTATTTTGCAGGCTT
cattgac putative branch site (score: 10)
tttactttct putative PPT
acaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttacctcctctacactttatgaaatttttgttaaaggatccttcttcaactgtaacaaatcactcgcttcgtgctgtttgttggtatcaaatgtttgacaaattaggtgcaattcattgacgcaagagtgtttactttctgcagAGTAAATCCTGTGACCGGCAATGCAACTAGAGAGACTCTACTATGCGATTGATCGACACATGAATACCTCAGCTGTTCTGAGATCCTATTTTGCAGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC