1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatactgattttgcaattgacttgtgcaatattatgcgtcataattaagcgtgaatttgtcatctcatttagcagcatttttcatgcttagtgaaaacttgttgggtgactgatgtgaatacgatttgctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG
species | Physcomitrella patens |
transcript | PP1S61_208V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|162173452|gb|FC349831.1|FC349831
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|162209806|gb|FC385740.1|FC385740
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|162190314|gb|FC365328.1|FC365328
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|100377053|gb|BY968340.1|BY968340
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: TGGACGGGACTACAGTGGNATTGACTCTA-TAAA-CAAGACTTTAAAACG TC-ATACTGCGGGCAG-CAAATTTCAAAGGAGCGAAGTTGTTEST: gi|162186363|gb|FC361671.1|FC361671
genomic: TGGACGGGACTACAGTGG-ATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGG-CAGGCAAATTTCAAAGGAGCGAAGTTGTT
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|100370508|gb|BY985444.1|BY985444
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCEST: gi|208350385|gb|DC906087.1|DC906087
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
EST: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACG TCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
genomic: CTGGACGGGACTACAGTGGATTGACTCTAATAAAACAAGACTTTAAAACGgtaatactga ... ctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGC
atgcttagtgaaaacttgttgggtgactgatgtgaatacgatttgctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG
gactgat putative branch site (score: 24)
aaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactgattttgcaattgacttgtgcaatattatgcgtcataattaagcgtgaatttgtcatctcatttagcagcatttttcatgcttagtgaaaacttgttgggtgactgatgtgaatacgatttgctgtacgcagTCCATACTGCGGCAGGCAAATTTCAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT