1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCAGGCGCTCCATCGTCATATAACTCCTTGCCTGTCACTTCTTGTAGAAATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttttcaaccccttactttgtatctggtgacagtggtatccatttgctaccttagcaggagacgtgaagcagaatgcttgaacgcttctatttt...
species | Physcomitrella patens |
transcript | PP1S61_208V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|162173452|gb|FC349831.1|FC349831
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|100431831|gb|BY978528.1|BY978528
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAAAGTT-GGEST: gi|162209806|gb|FC385740.1|FC385740
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAG-GTTTGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|100377053|gb|BY968340.1|BY968340
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|162186363|gb|FC361671.1|FC361671
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|100370508|gb|BY985444.1|BY985444
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGGEST: gi|208350385|gb|DC906087.1|DC906087
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
EST: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAG GTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
genomic: ATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttt ... tggtttccagGTTGATCATGCCGAGCGAGATTATGAATTCGCAGGGTTGCAGAGGTTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGGCGCTCCATCGTCATATAACTCCTTGCCTGTCACTTCTTGTAGAAATGTTGATAAGAATTTGTATTACAAGGAAGCGGACGAGAAATCAAGAGAGgttagtgttttcaaccccttactttgtatctggtgacagtggtatccatttgctaccttagcaggagacgtgaagcagaatgcttgaacgcttctatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA