1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattgagattgtccatcttcgtgtccaatctctgccatgccatccgcattatcaagagaagtaacgagctctcattagcaccttgaaatacctgcgtatttatggcttccgtttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAGACTATCAAAG
species | Physcomitrella patens |
transcript | PP1S61_208V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAEST: gi|162173452|gb|FC349831.1|FC349831
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGAEST: gi|162209806|gb|FC385740.1|FC385740
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAEST: gi|162190314|gb|FC365328.1|FC365328
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAEST: gi|162186363|gb|FC361671.1|FC361671
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGACCTTANGGGAGCTGATCTTTCATTAGCAAEST: gi|100370508|gb|BY985444.1|BY985444
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCCGACCTTAGGGGAGCTGATCTTTCATTTAGCAEST: gi|208350385|gb|DC906087.1|DC906087
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATT-AGCA
EST: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAG GAGCTGACCTTACTGATGCGGACCTTAGGGAA-CTGATCTT
genomic: CAAAGGAGCGAAGTTGTTAGGTGCGAGCTTCTTCGACTCAGACTTAACAGgtaattgaga ... ttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTT
gctctcattagcaccttgaaatacctgcgtatttatggcttccgtttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAGACTATCAAAG
cttccgttt CT-rich tract
tatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgagattgtccatcttcgtgtccaatctctgccatgccatccgcattatcaagagaagtaacgagctctcattagcaccttgaaatacctgcgtatttatggcttccgtttgcctacagGAGCTGACCTTACTGATGCGGACCTTAGGGGAGCTGATCTTTCATTAGCAAGACTATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA