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gtcagtcatcttcatacttggcacatattgtctttcataactttatccgttacatccatgataagttgacaagtttccatatgtaactcgaattggtgacttattcactgggttcttctgttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACCTTGAAGGAAGG
species | Physcomitrella patens |
transcript | PP1S61_202V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162262550|gb|FC439541.1|FC439541
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162275765|gb|FC451936.1|FC451936
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162162081|gb|FC338872.1|FC338872
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|37826384|gb|BJ584396.1|BJ584396
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|15319990|gb|BI487352.1|BI487352
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162247557|gb|FC421678.1|FC421678
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162262536|gb|FC439540.1|FC439540
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162272506|gb|FC448508.1|FC448508
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|162162080|gb|FC338871.1|FC338871
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTGGAAGACGCTATTCACACAGCGATTTTTACEST: gi|162272507|gb|FC448509.1|FC448509
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACEST: gi|6166850|gb|AW145114.1|AW145114
genomic: TCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
EST: GCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG GTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
genomic: GCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatc ... gttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTAC
ttccatatgtaactcgaattggtgacttattcactgggttcttctgttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACCTTGAAGGAAGG
atgtaac putative branch site (score: 2)
ttcttctgttc putative PPT
tatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcatcttcatacttggcacatattgtctttcataactttatccgttacatccatgataagttgacaagtttccatatgtaactcgaattggtgacttattcactgggttcttctgttcaagcagGTATACCGATGACATGGAACTCGAAGACGCTATTCACACAGCGATTCTTACCTTGAAGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA