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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggcgcccagctcttgctgttttttcttgtataatgttggattgtgccgatgacctaactggtatgagatattttgtcgctgtgtttggctctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGCAGGTCAAACTTCTCTCGGGATCAAAG

Basic information

species Physcomitrella patens
transcript PP1S61_202V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162262550|gb|FC439541.1|FC439541
EST:     ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAG                         TCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
genomic: ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAGgtttgtgcac ... tctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
EST: gi|18347210|gb|BJ179256.1|BJ179256
EST:     ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAG                         TCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
genomic: ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAGgtttgtgcac ... tctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
EST: gi|162275765|gb|FC451936.1|FC451936
EST:     ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAG                         TCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
genomic: ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAGgtttgtgcac ... tctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
EST: gi|162162081|gb|FC338872.1|FC338872
EST:     ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAG                         TCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
genomic: ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAGgtttgtgcac ... tctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
EST: gi|162272507|gb|FC448509.1|FC448509
EST:     ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAG                         TCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC
genomic: ATTTCAGCTATGGGAGACAGCCAGTACTCGTTTTCGCTCACCACTTTCAGgtttgtgcac ... tctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgatgacctaactggtatgagatattttgtcgctgtgtttggctctgcggcagTCCGTCTGGAAAATTGGTGCAGATCGAATATGCCTTGATGGCTGTAGGTGCAGGTCAAACTTCTCTCGGGATCAAAG
       acctaac  putative branch site (score: 2)
                     agatatttt  TA-rich tract