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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttggtgacattgttacctttgtgtaggcttgcatcaagttgtgccatttttcctgtaacttcaatgagagaatatttcgacttctttatatttgcagGCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAATTTCTTTGTGTCAAAAGTTCTACAGTTGACAGTCAGCGTCATTCAGCGA

Basic information

species Physcomitrella patens
transcript PP1S61_135V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67692114|gb|BJ952347.1|BJ952347
EST:     CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAG                         GCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA
genomic: CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAGgtaagctgtt ... atatttgcagGCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA
EST: gi|208397044|gb|DC928887.1|DC928887
EST:     CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAG                         GCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA
genomic: CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAGgtaagctgtt ... atatttgcagGCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA
EST: gi|162195767|gb|FC371158.1|FC371158
EST:     CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAG                         GCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA
genomic: CCACCAAAATTGTTTTGCGGGCTGTCCCTCCCTCTACCCCCAATTTGAAGgtaagctgtt ... atatttgcagGCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatttttcctgtaacttcaatgagagaatatttcgacttctttatatttgcagGCTTTGGAAGTGGAGTTTAACAACAGAGACAAATACATCTACTCTGCAGAATTTCTTTGTGTCAAAAGTTCTACAGTTGACAGTCAGCGTCATTCAGCGA
          ctgtaac  putative branch site (score: 3)
                                      cttctttat  putative PPT
                                     acttctttatattt  TA-rich tract