Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccatcttgagtgattaagactctgtaagtctgagcaactgtggtatcttggagttgtaccaactgagattgatgttttccaattgcttgtatgaaacagATTGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACCTCTTTCTCTTCCTCCCCCATTTGTGCCACCAAAATTGTTTTGCGGGCTG

Basic information

species Physcomitrella patens
transcript PP1S61_135V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67692114|gb|BJ952347.1|BJ952347
EST:     CGGAAGATGCTCCTG-TGGAGCGGTCCCCGAGGACGCGAATCAAC                         AATGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACC
genomic: CGGAAGATGCTCCTGTTGGAGCGGTCCCCGAGGACGCGAATCAACgtaagtttgt ... tatgaaacagATTGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACC
EST: gi|162195767|gb|FC371158.1|FC371158
EST:     AAAAACGGAAGATGCTCCTGTTGGAGCGGTCCCCGAGGACGCGAATCAAC                         ATTGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACC
genomic: AAAAACGGAAGATGCTCCTGTTGGAGCGGTCCCCGAGGACGCGAATCAACgtaagtttgt ... tatgaaacagATTGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttggagttgtaccaactgagattgatgttttccaattgcttgtatgaaacagATTGTCCTGGGACGATTGTCTTGGGATTGTCTTATACGAGGCCTCGCTACCTCTTTCTCTTCCTCCCCCATTTGTGCCACCAAAATTGTTTTGCGGGCTG
                      gattgat  putative branch site (score: 4)
                           atgtttt  TA-rich tract