1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccgtttcactataatcctaatattcaaacacatccaagtgatgtccttctctgtattatccgatttctgtcatcggtttgacagtaacagattgtttcgtacttttgaggctgaaattatgatatgttcggtattaaattgacattgacgtgtttccttattcctatgcatatgatgaaatggatttttgcagGTTTTGGAGTTGCTTGGACTAGGAGGTTCAGAAGAGAGCCAACATAAATCAGGGTCCGGCCCTAATCCACCGCCACTGGCTTCTCAACAAGCCGTGGTGT
species | Physcomitrella patens |
transcript | PP1S567_2V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAATTCACAATCTCCACAGGCTTCCTTGAAGGAGAAATCTAAGAAG GTTTTGGAGTTGCTTGGACTAGGAGGTTCAGAAGAGAGCCAACATAAATCA
genomic: TTGAAAATTCACAATCTCCACAGGCTTCCTTGAAGGAGAAATCTAAGAAGgtccgtttca ... atttttgcagGTTTTGGAGTTGCTTGGACTAGGAGGTTCAGAAGAGAGCCAACATAAATCA
ttgacattgacgtgtttccttattcctatgcatatgatgaaatggatttttgcagGTTTTGGAGTTGCTTGGACTAGGAGGTTCAGAAGAGAGCCAACATAAATCAGGGTCCGGCCCTAATCCACCGCCACTGGCTTCTCAACAAGCCGTGGTGT
cattgac putative branch site (score: 4)
tttttgc putative PPT
attttt TA-rich tract