1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggaagtcatccatgtttgcgagtcggtcccctgattgcaagcactgctgtctcgattgaaaacatttttgcccgcattcagaagtgtgttattgtcttgagaaggagtctaattgaacgttttgccttactgttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAGACTGCACAAGAGGCATTATCTGCCATATTTGCATCCAATGATAAACCG
species | Physcomitrella patens |
transcript | PP1S567_2V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAG GGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAEST: gi|18327589|gb|BJ159592.1|BJ159592
genomic: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAGgttggaagtc ... ttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
EST: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAG GGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAEST: gi|18328736|gb|BJ160741.1|BJ160741
genomic: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAGgttggaagtc ... ttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
EST: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAG GGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAEST: gi|18331925|gb|BJ163937.1|BJ163937
genomic: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAGgttggaagtc ... ttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
EST: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAG GGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAEST: gi|100371479|gb|BY967999.1|BY967999
genomic: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAGgttggaagtc ... ttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
EST: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAG GGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
genomic: CGGGAAATTCAACGACAAGCTCCAGCCGTTCGAAATTTGTTGCACTACAGgttggaagtc ... ttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGA
gttattgtcttgagaaggagtctaattgaacgttttgccttactgttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAGACTGCACAAGAGGCATTATCTGCCATATTTGCATCCAATGATAAACCG
gccttac putative branch site (score: 15)
taattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaagtcatccatgtttgcgagtcggtcccctgattgcaagcactgctgtctcgattgaaaacatttttgcccgcattcagaagtgtgttattgtcttgagaaggagtctaattgaacgttttgccttactgttcattgcagGGGGGCACCAGATGCCTTGAAAGGAGATGCTTTGAACAAGGCTGTGCGTGAGACTGCACAAGAGGCATTATCTGCCATATTTGCATCCAATGATAAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG