1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTGATGGGATTTGGGAGTTCAACAATTCGACAGATGAGTGGATTGGCCAGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacgtgcatttattgtgttgtgtaaaatttaatagcttttttttgtaataagaaataagaaactaaaaaacacttttattaagggtattctcat...
species | Physcomitrella patens |
transcript | PP1S567_2V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCEST: gi|18369194|gb|BJ201279.1|BJ201279
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTANCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCEST: gi|18365604|gb|BJ197681.1|BJ197681
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGATGGGATTTGGGAGTTCAACAATTCGACAGATGAGTGGATTGGCCAGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacgtgcatttattgtgttgtgtaaaatttaatagcttttttttgtaataagaaataagaaactaaaaaacacttttattaagggtattctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaaa