1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acgaccgtgtgcgtatatcaaaattttacaagtaatcatttagagcaaaatttcaaacctttgttctcacgtgcttgcaattttacgattggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCGTCAGATTCTCAAGTATCGACGTACTCCTTGAGTTCGAATGAAACTTTT
species | Physcomitrella patens |
transcript | PP1S567_2V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCEST: gi|18369194|gb|BJ201279.1|BJ201279
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTANCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCEST: gi|18365604|gb|BJ197681.1|BJ197681
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
EST: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAG GGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
genomic: AGCAGTGGGAGCAGCGGGAACTATGGTAATTCAAGCTCTAGCTCCTACAGgtaattaacg ... ggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCC
caaaatttcaaacctttgttctcacgtgcttgcaattttacgattggcttcacagGGGACCCAATTTAAGAAGATCATTGACTGATAGAGAAAGTAAGTACAATCCGTCAGATTCTCAAGTATCGACGTACTCCTTGAGTTCGAATGAAACTTTT
ttctcac putative branch site (score: 4)
aatttta TA-rich tract