Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctaatgtacatatccattttctatacctggtttacgtaattgttttacaagcttgctgattaaagagtcagatatttattctcattgttgattcctgtgtgtatgcagCGGAGGAACATTTTACAGAGAAAGCTATGGTAGATGTGAAGGCATTGAAAGATACAAATCCAGAATATGCGCTTGTTTTGGATGATTTTGATCCCAAAAA

Basic information

species Physcomitrella patens
transcript PP1S55_292V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196306|gb|FC373530.1|FC373530
EST:     GGTTTGTCCCATCTTG                         CGGAGGAACATTTTACAGAGAAAGCTATGGTAGATGTGAAGGCATTGAAAG
genomic: GGTTTGTCCCATCTTGgtaagatcta ... gtgtatgcagCGGAGGAACATTTTACAGAGAAAGCTATGGTAGATGTGAAGGCATTGAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgattaaagagtcagatatttattctcattgttgattcctgtgtgtatgcagCGGAGGAACATTTTACAGAGAAAGCTATGGTAGATGTGAAGGCATTGAAAGATACAAATCCAGAATATGCGCTTGTTTTGGATGATTTTGATCCCAAAAA
                  atatttattctcatt  TA-rich tract