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gtaggccctcaccgtgtcactaaggataatataccaagagtctctcaacactttatgataataataataataattattattattattatttttaatctgaacctgggcatctgatattgattgtttactgtgtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAGCATTCAGGAATCCTTCCTACAAATTGGGACGCTGGAAACTGCTGCAAC
species | Physcomitrella patens |
transcript | PP1S55_292V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37823684|gb|BJ581750.1|BJ581750
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|18338814|gb|BJ170839.1|BJ170839
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|18339023|gb|BJ171049.1|BJ171049
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37826601|gb|BJ584613.1|BJ584613
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37821290|gb|BJ579356.1|BJ579356
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37828784|gb|BJ586796.1|BJ586796
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|162196305|gb|FC373529.1|FC373529
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37833004|gb|BJ591016.1|BJ591016
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAEST: gi|37828728|gb|BJ586740.1|BJ586740
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
EST: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCG GTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
genomic: TCCTCGCTGGTCTGCCCTCAGTACTGGGAGTTCTCCCTCTTTGGCTTGCGgtaggccctc ... gtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGA
tatttttaatctgaacctgggcatctgatattgattgtttactgtgtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAGCATTCAGGAATCCTTCCTACAAATTGGGACGCTGGAAACTGCTGCAAC
tattgat putative branch site (score: 14)
atattgattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggccctcaccgtgtcactaaggataatataccaagagtctctcaacactttatgataataataataataattattattattattatttttaatctgaacctgggcatctgatattgattgtttactgtgtgggtgcagGTACTTATGCATGAAGGCGGTACTTTACTTGTATGCGTGAATTCTGTGAGAGCATTCAGGAATCCTTCCTACAAATTGGGACGCTGGAAACTGCTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC