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AATTTAGGTCTAGGGTTCCATAACAAGGGTCGTGTGTTGCGGAGAGATTTCGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgttgttgagctgttctcttgatgatgatgttggaattgaagagtctctgccgctttgtcatgatggagactgccatctttatcaggaaggttt...
species | Physcomitrella patens |
transcript | PP1S55_292V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAG GAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTAEST: gi|18347404|gb|BJ179450.1|BJ179450
genomic: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgtt ... gtaattgcagGAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTA
EST: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAG GAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTAEST: gi|18356062|gb|BJ188121.1|BJ188121
genomic: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgtt ... gtaattgcagGAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTA
EST: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAG GAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTAEST: gi|18351955|gb|BJ184007.1|BJ184007
genomic: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgtt ... gtaattgcagGAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTA
EST: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAG GAAACATACTGGAAGCAACTCGTGCACTCAAEST: gi|18344485|gb|BJ176525.1|BJ176525
genomic: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgtt ... gtaattgcagGAAACATACTGGAAGCAACTCGTGCACTCAA
EST: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAG GAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTA
genomic: CGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgtt ... gtaattgcagGAAACATACTGGAAGCAACTCGTGCACTCAAAGCCAATGAAAACAGCTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTAGGTCTAGGGTTCCATAACAAGGGTCGTGTGTTGCGGAGAGATTTCGGTGGAGTACCTCGCAGGAATGATTTTTTGTGTGATGGTGCCGATGGAGgtgcgttgttgttgagctgttctcttgatgatgatgttggaattgaagagtctctgccgctttgtcatgatggagactgccatctttatcaggaaggttt
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA