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gtaagagtgaacactatcgtttacatttctttattattgttattagacattcgaagttcaaccttatgaaatccaatttcttcatgtaattgtatcttctttgtctctgacgttgtcttttactcttatttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCATTAGCAGCTGCAACGATTGGGATTGTTCTTGCACAGAATGCTAGTGCAAC
species | Physcomitrella patens |
transcript | PP1S55_292V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAANCCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAG ACTGCGGAGGTTTTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCAEST: gi|37828784|gb|BJ586796.1|BJ586796
genomic: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAGgtaagagtga ... tttcaagcagACTGCGGAGG-TCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCA
EST: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAG ACTGCGGAGGTNTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCATEST: gi|162196305|gb|FC373529.1|FC373529
genomic: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAGgtaagagtga ... tttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCAT
EST: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAG ACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCATEST: gi|37828728|gb|BJ586740.1|BJ586740
genomic: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAGgtaagagtga ... tttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCAT
EST: GAANCCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAG ACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCAT
genomic: GAAACCAGACGATAAGCTATCGCAAGTACAGCGTTTGAGACAAGAGAAAGgtaagagtga ... tttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCAT
atgtaattgtatcttctttgtctctgacgttgtcttttactcttatttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCATTAGCAGCTGCAACGATTGGGATTGTTCTTGCACAGAATGCTAGTGCAAC
ctctgac putative branch site (score: 5)
tcttttactcttattt putative PPT
ttttactcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtgaacactatcgtttacatttctttattattgttattagacattcgaagttcaaccttatgaaatccaatttcttcatgtaattgtatcttctttgtctctgacgttgtcttttactcttatttcaagcagACTGCGGAGGTCTAGTGATGGTTGGCGACGGAATCAACGATGGCCCTGCATTAGCAGCTGCAACGATTGGGATTGTTCTTGCACAGAATGCTAGTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC