1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttattctaaaaaaatcactataatattattgtattattacagtgtaatattcttaatctaaaaaattagtattctagcaaatgctcactttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGTTTGAAGAGCAAATTTACGCCGAGACGTTGCGCAAGGTTCCTCAGATGT
species | Physcomitrella patens |
transcript | PP1S509_13V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGGCTGCGACTGGATGGCGGATTTGAGCATGEST: gi|208348747|gb|DC926422.1|DC926422
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGEST: gi|37846355|gb|BJ604363.1|BJ604363
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGEST: gi|67692834|gb|BJ953067.1|BJ953067
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
taatattcttaatctaaaaaattagtattctagcaaatgctcactttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGTTTGAAGAGCAAATTTACGCCGAGACGTTGCGCAAGGTTCCTCAGATGT
tgctcac putative branch site (score: 5)
ctcacttt CT-rich tract
ttcttaatctaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattctaaaaaaatcactataatattattgtattattacagtgtaatattcttaatctaaaaaattagtattctagcaaatgctcactttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGTTTGAAGAGCAAATTTACGCCGAGACGTTGCGCAAGGTTCCTCAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG